usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 5.04082142857143 1.85796428571429 9.46425
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1234
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 719
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 718
Number of spheres polar: 256, nonpolar: 277, out of current total: 718
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.92414 13.94437 -7.88000 11.65050 -0.44580 19.44166
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 171
Spheres center of coords (x y z): 3.06666596491228 1.79200994152047 7.55064204678363
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.84814264853539
Final number of output spheres is: 45
Number of polar spheres: 16
Number of nonpolar spheres: 22
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 28