usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 0.0196538461538461 -35.3922307692308 0.102 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1261 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 714 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 713 Number of spheres polar: 293, nonpolar: 272, out of current total: 713 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.47021 9.98200 -45.19526 -25.52052 -9.72461 10.08049 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 254 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 203 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 196 Spheres center of coords (x y z): 1.60919387755102 -39.0725056122449 0.64714806122449 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83177827950758 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 26