usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 0.0196538461538461 -35.3922307692308 0.102 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1261 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 714 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 713 Number of spheres polar: 293, nonpolar: 272, out of current total: 713 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.47021 9.98200 -45.19526 -25.52052 -9.72461 10.08049 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 382 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 346 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 339 Spheres center of coords (x y z): 1.54091457227139 -38.8698305309734 0.437808230088496 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.7120929766216 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 26