usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 17.9442631578947 38.4238421052632 4.31368421052631 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 940 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 695 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 695 Number of spheres polar: 217, nonpolar: 313, out of current total: 695 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.97224 27.86504 28.47379 44.17487 -4.12158 14.30200 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 365 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 322 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 310 Spheres center of coords (x y z): 18.4579029677419 34.7532023548387 3.81105325806452 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.01073250496924 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 19