usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -0.695642857142857 36.3673571428571 48.2613571428572 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1128 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 870 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 870 Number of spheres polar: 300, nonpolar: 294, out of current total: 870 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.65667 7.53110 28.56719 46.18977 38.27180 58.24900 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 243 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): -0.240443632478632 39.4873440598291 48.5226368803418 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.25653990742693 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 14