usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 31.9410740740741 8.76340740740741 25.3486666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1205 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 719 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 718 Number of spheres polar: 255, nonpolar: 309, out of current total: 718 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.03744 41.93290 -1.11741 15.88583 15.36247 35.22435 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 212 Spheres center of coords (x y z): 33.8969875471698 5.05208113207547 25.7114251415094 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89284933392129 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 27