usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 32.5012058823529 8.33435294117647 24.9339411764706 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1202 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 680 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 680 Number of spheres polar: 242, nonpolar: 306, out of current total: 680 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.86986 42.46936 -1.65261 15.73083 15.07117 34.81485 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 245 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 34.0342787368421 5.086118 24.7676211052631 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.23809478262766 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 34