usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 32.987875 8.16359375 25.00984375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1258 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 679 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 679 Number of spheres polar: 228, nonpolar: 288, out of current total: 679 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.04226 42.93180 -1.78819 15.62309 15.22975 34.98485 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 391 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 343 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 339 Spheres center of coords (x y z): 34.2915945722714 5.51372825958702 24.7915208849558 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.19012170803202 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 32