usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 1.92339130434783 10.0037826086957 25.8665217391304 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1376 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 886 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 886 Number of spheres polar: 232, nonpolar: 470, out of current total: 886 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.04566 11.89990 0.08612 16.11975 16.33900 35.81626 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 3.89334795238095 7.21736785714285 25.752819 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0340597975654 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 23