usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 33.14312 9.58936 24.95936 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1262 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 672 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 672 Number of spheres polar: 230, nonpolar: 322, out of current total: 672 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.48287 42.86831 -0.38905 16.17110 15.12900 34.86770 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 372 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 320 Spheres center of coords (x y z): 33.62788234375 5.7701165625 24.69961465625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.02652918041693 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 25