usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -0.998227272727273 35.2877272727273 -0.777954545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1152 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 573 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 571 Number of spheres polar: 219, nonpolar: 196, out of current total: 571 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.75124 8.91279 28.93974 45.09444 -10.73895 9.02095 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 328 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 281 Spheres center of coords (x y z): 1.19026028469751 38.8811341992883 -0.9628343772242 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.60819513981818 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 22