usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 4.52033333333333 13.5575 24.3595
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1174
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 791
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 791
Number of spheres polar: 232, nonpolar: 464, out of current total: 791
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.08509 14.41114 3.58652 16.50584 16.48282 33.43916
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 211
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 161
Spheres center of coords (x y z): 3.94176863354037 8.83680776397516 24.532590931677
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.06261207760733
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 12