usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 5.36316666666667 13.19875 24.3875
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1100
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 717
Number of spheres polar: 194, nonpolar: 442, out of current total: 717
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.79164 15.28200 3.20209 21.18918 16.27903 34.23931
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 341
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 299
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 294
Spheres center of coords (x y z): 5.6969274489796 9.51038955782313 25.0265217687075
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.91693778325033
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 12