usefragsph not on
There are 16 ligand heavy atoms
Ligand center of coords (x y z): 7.1399375 -1.705125 9.468375
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 891
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 680
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 680
Number of spheres polar: 255, nonpolar: 329, out of current total: 680
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.78801 16.45700 -11.65959 8.25727 -0.51950 19.21868
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 353
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 307
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 296
Spheres center of coords (x y z): 5.20821097972973 -1.64405385135135 5.60075628378378
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.40276112730701
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 44
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 16