usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 2.14744 9.73496 25.08688
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1120
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 663
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 663
Number of spheres polar: 207, nonpolar: 259, out of current total: 663
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.21444 11.64983 0.14289 14.77794 15.10235 34.85597
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 248
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 198
Spheres center of coords (x y z): 2.36008156565657 6.23356883838384 25.2378834848485
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.90336644296822
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 25