usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 15.0493913043478 -5.11582608695652 8.33269565217391 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1065 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 678 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 678 Number of spheres polar: 189, nonpolar: 318, out of current total: 678 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.21904 25.03719 -14.98997 4.86016 -1.61348 18.32883 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 238 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): 15.0974781621622 -3.78321151351351 4.40372291891892 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.44009700313629 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 23