usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.6924 -3.63496666666667 5.77713333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1032 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 719 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 221, nonpolar: 283, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.77132 24.67264 -13.54400 6.21518 -4.09301 14.01892 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 192 Spheres center of coords (x y z): 15.179535625 -3.65850739583333 3.14661703125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87770487363769 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 30