usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.6924 -3.63496666666667 5.77713333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1032 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 719 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 221, nonpolar: 283, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.77132 24.67264 -13.54400 6.21518 -4.09301 14.01892 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 415 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 358 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 325 Spheres center of coords (x y z): 14.5777095384615 -3.70936627692307 3.55440196923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93345841813297 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 30