usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 5.21418518518519 -1.08881481481481 7.55177777777778
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 956
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 654
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 652
Number of spheres polar: 231, nonpolar: 249, out of current total: 652
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.74320 15.15954 -10.99240 8.28201 -1.93905 16.08090
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 240
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 184
Spheres center of coords (x y z): 4.0793239673913 -2.24262472826087 5.45651038043479
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.1524510106651
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 27