usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 16.5499375 -2.0353125 50.7095625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 871 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 600 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 600 Number of spheres polar: 196, nonpolar: 241, out of current total: 600 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.59824 24.65687 -11.93806 7.84946 40.74907 60.59100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 201 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 155 Spheres center of coords (x y z): 15.6025472258064 -2.70018606451613 55.1281392903226 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.71749952472976 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 16