usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.8931363636364 -2.22922727272727 51.449 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1014 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 701 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 701 Number of spheres polar: 234, nonpolar: 293, out of current total: 701 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.27105 24.95394 -12.16092 7.46621 41.50640 61.38622 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 233 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 189 Spheres center of coords (x y z): 15.0442593121693 -3.13443576719577 55.713752063492 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.048855109387 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 22