usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 3.16496296296296 11.2215925925926 25.1838518518518
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1370
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 827
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 827
Number of spheres polar: 233, nonpolar: 449, out of current total: 827
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.12939 13.15955 1.22499 16.46430 15.28332 35.09124
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 272
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 214
Spheres center of coords (x y z): 4.36066476635514 7.66598686915888 25.1025738317757
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.89212740876419
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 27