usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.1527666666667 -1.51933333333333 51.8936 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1225 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 727 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727 Number of spheres polar: 228, nonpolar: 277, out of current total: 727 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.21600 23.80856 -11.27200 8.41566 42.71692 61.85546 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 212 Spheres center of coords (x y z): 14.4340821698113 -2.59819320754717 55.4877050943397 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.13443837916299 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 30