usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 4.8256 12.652 23.8865333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1263 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 800 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 800 Number of spheres polar: 217, nonpolar: 473, out of current total: 800 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.64560 14.78411 2.67715 20.58542 13.98051 33.85777 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 198 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 192 Spheres center of coords (x y z): 5.08694026041667 8.461199375 24.4527545833333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.20230510926857 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 15