usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 32.8995 10.41375 -0.5575 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 913 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 655 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 655 Number of spheres polar: 230, nonpolar: 261, out of current total: 655 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.91217 42.15062 0.43123 19.45477 -10.52948 9.39940 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 350 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 313 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 308 Spheres center of coords (x y z): 30.1457827922078 6.60187525974026 -0.331540227272727 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.96620247868775 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 12