usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): -0.11425 10.4295 25.2190833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1111 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 791 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 790 Number of spheres polar: 201, nonpolar: 424, out of current total: 790 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.05803 9.87122 0.50242 16.59621 15.26834 35.10733 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 405 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 362 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 354 Spheres center of coords (x y z): 2.88191895480226 7.68117412429379 24.9404661581921 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.21662463461193 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 12