usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 70.5506060606061 11.2119393939394 24.7712727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1582 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 825 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 824 Number of spheres polar: 170, nonpolar: 531, out of current total: 824 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 61.34233 80.44681 1.22284 16.58615 15.03559 34.57436 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 440 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 386 Spheres center of coords (x y z): 72.298265880829 7.64886113989637 24.7492533937824 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52263997497468 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 48 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 33