usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 69.79109375 11.11528125 24.77646875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1578 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 889 Number of spheres polar: 220, nonpolar: 555, out of current total: 889 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 61.29335 79.69771 1.14525 16.51489 14.82295 34.50164 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 270 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 217 Spheres center of coords (x y z): 71.7696659907834 7.51730603686636 24.9032253917051 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32592206598002 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 32