usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 15.74888 -1.9538 51.1238
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1043
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 668
Number of spheres polar: 227, nonpolar: 254, out of current total: 668
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.75998 25.70680 -11.95343 7.99238 41.17749 61.11142
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 391
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 340
Spheres center of coords (x y z): 14.6271566470588 -2.83061120588235 55.015875
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.12889604603319
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 25