usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): 2.69368571428571 -10.0139142857143 -25.6801428571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1403
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 847
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 847
Number of spheres polar: 237, nonpolar: 467, out of current total: 847
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.95420 12.52642 -16.48002 -0.06739 -35.49083 -15.76775
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 443
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 374
Spheres center of coords (x y z): 4.21176759358289 -7.60338885026738 -25.631819117647
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.77087600094493
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 45
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 35