Distance from surface specified: 1.80 There are 22 ligand heavy atoms Ligand center of coords (x y z): 2.69959090909091 11.4538636363636 24.8025 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13613 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9901 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9901 Number of spheres polar: 4728, nonpolar: 4207, out of current total: 9901 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.29900 16.67900 -2.53440 25.44700 10.82140 38.80160 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1428 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 706 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 636 Spheres center of coords (x y z): 5.93134025157232 5.83920345911949 26.9837188679245 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.9076811370361 Final number of output spheres is: 200 Number of polar spheres: 101 Number of nonpolar spheres: 94 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 22