There are 22 ligand heavy atoms Ligand center of coords (x y z): 2.69959090909091 11.4538636363636 24.8025 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13613 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7459 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7459 Number of spheres polar: 3650, nonpolar: 3061, out of current total: 7459 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.29340 14.69540 -0.54360 23.44880 12.82180 36.80180 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1152 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 525 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 500 Spheres center of coords (x y z): 5.0076572 5.4213508 25.605334 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.2856466182668 Final number of output spheres is: 120 Number of polar spheres: 57 Number of nonpolar spheres: 61 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22