usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): 2.69959090909091 11.4538636363636 24.8025
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1561
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 960
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 960
Number of spheres polar: 288, nonpolar: 489, out of current total: 960
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.51884 12.68875 1.51090 16.24168 14.80437 34.79233
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 480
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 413
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 412
Spheres center of coords (x y z): 4.18993223300971 7.6577647815534 24.9263002427185
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.81064752664222
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 22