usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): -25.3516666666667 -4.709 12.5365833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 853 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 571 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 571 Number of spheres polar: 352, nonpolar: 155, out of current total: 571 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.27476 -15.61781 -14.67694 3.08671 2.55521 22.30181 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 160 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 115 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 56 Spheres center of coords (x y z): -22.6646073214286 -3.42191071428572 8.08996946428571 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.53883476781796 Final number of output spheres is: 45 Number of polar spheres: 32 Number of nonpolar spheres: 7 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 12