usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -0.103135135135135 2.48208108108108 -16.3409189189189 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1810 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 900 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 179, nonpolar: 551, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.09797 9.89393 -7.43509 12.47757 -26.31266 -6.41115 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 291 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 211 Spheres center of coords (x y z): 1.80978701421801 1.19423758293839 -18.9281187677725 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81341699494172 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37