usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -0.103135135135135 2.48208108108108 -16.3409189189189 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1810 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 900 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 179, nonpolar: 551, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.09797 9.89393 -7.43509 12.47757 -26.31266 -6.41115 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 490 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 416 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 378 Spheres center of coords (x y z): 1.71914891534392 1.55064576719577 -18.8772443121693 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49898890939305 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 37