usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -28.9641612903226 58.5569677419355 -8.27187096774194 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1646 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 873 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 869 Number of spheres polar: 288, nonpolar: 328, out of current total: 869 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -38.78506 -18.98279 48.58974 68.33514 -18.23367 1.69145 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 252 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 235 Spheres center of coords (x y z): -27.2942026808511 58.8471448085107 -7.37749029787234 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21100063948061 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 31