usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 24.6223783783784 18.1844054054054 -5.55808108108108 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 823 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 823 Number of spheres polar: 195, nonpolar: 472, out of current total: 823 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.63728 34.61106 8.20759 28.18422 -15.47935 4.44150 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 253 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 217 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): 23.4033719900498 18.3410764179105 -2.75133497512438 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.3284145799524 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 37