usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 81.7387105263158 50.5106842105263 147.654500526316 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1647 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 835 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 835 Number of spheres polar: 245, nonpolar: 379, out of current total: 835 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 71.78297 91.66558 40.56255 60.44994 137.66342 157.65172 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 289 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 81.288784 51.3087642380953 150.256550809524 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.78195272899862 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 38