usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -15.2846176470588 3.41070588235294 10.8522941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1256 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 752 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 257, nonpolar: 362, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -25.26388 -5.34769 -6.57043 13.18151 0.88519 20.78667 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 179 Spheres center of coords (x y z): -13.4335534636871 4.29903033519553 8.60365899441341 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61227010606282 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 34