usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 5.51396666666667 -6.49043333333333 21.1816333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1259
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 654
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 652
Number of spheres polar: 211, nonpolar: 327, out of current total: 652
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.37942 14.88592 -16.39616 3.43094 11.23520 31.08583
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 359
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 315
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 273
Spheres center of coords (x y z): 6.37595915750916 -7.52768355311355 21.584961978022
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.99967357946225
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 30