There are 30 ligand heavy atoms Ligand center of coords (x y z): 5.51396666666667 -6.49043333333333 21.1816333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13485 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9944 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9944 Number of spheres polar: 5637, nonpolar: 3029, out of current total: 9944 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.47720 17.46860 -18.48240 5.50920 9.19160 33.18100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1725 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 694 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 678 Spheres center of coords (x y z): 4.70844778761062 -9.0402814159292 23.1432188790561 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.8440551310171 Final number of output spheres is: 120 Number of polar spheres: 74 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 30