usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 17.0669583333333 15.5446666666667 8.74095833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1811 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1004 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1004 Number of spheres polar: 175, nonpolar: 591, out of current total: 1004 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.13834 27.06474 5.66949 25.54200 -1.21239 18.69591 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 571 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 499 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 461 Spheres center of coords (x y z): 19.2829509327549 14.8087124078091 11.3285876789588 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30762809954602 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 24