usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.9057333333333 14.7637666666667 8.34376666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1962 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 816 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 816 Number of spheres polar: 178, nonpolar: 458, out of current total: 816 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.90936 24.87899 8.69246 24.74965 -1.62347 18.34061 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 261 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 206 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 18.0560392215569 16.8809500598802 8.71602431137725 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.27387346494591 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 30