usefragsph not on
There are 17 ligand heavy atoms
Ligand center of coords (x y z): 7.17688235294118 8.207 36.0157058823529
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1163
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 820
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 819
Number of spheres polar: 213, nonpolar: 407, out of current total: 819
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.64165 17.14345 -1.74926 18.17500 28.74630 45.94672
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 415
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 352
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 320
Spheres center of coords (x y z): 9.39730559375 6.0571088125 38.6820079375
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.95385051579424
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 17