usefragsph not on
There are 5 ligand heavy atoms
Ligand center of coords (x y z): 6.505 -34.9384 41.5352
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 207
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 181
WARNING: removing a crystallographic sphere that is distance 1.16796960576892 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 180
Number of spheres polar: 52, nonpolar: 96, out of current total: 180
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.22978 16.45004 -43.18255 -29.09083 31.87912 43.67316
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 105
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 91
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 84
Spheres center of coords (x y z): 8.28028107142857 -32.7502255952381 37.7428623809524
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.91702701470993
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 4