usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 16.8477058823529 11.5711764705882 9.98458823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1018 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 634 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 633 Number of spheres polar: 164, nonpolar: 262, out of current total: 633 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.03543 26.73616 2.19581 21.55005 0.31424 19.85350 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 347 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 297 Spheres center of coords (x y z): 18.1903751851852 15.6755046464647 9.25903861952861 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.60404045209443 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 17