usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 15.3838947368421 12.3251052631579 9.27494736842105 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1415 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 802 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 802 Number of spheres polar: 159, nonpolar: 489, out of current total: 802 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.40308 25.28826 2.44950 22.31683 -0.64954 19.25248 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 298 Spheres center of coords (x y z): 19.2239880536913 15.0080857718121 9.22149755033558 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.80253736753904 Final number of output spheres is: 60 Number of polar spheres: 5 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 19