usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 27.6143181818182 23.1382272727273 102.884818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1771 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 812 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 812 Number of spheres polar: 135, nonpolar: 433, out of current total: 812 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.65037 37.50365 13.14603 33.13522 92.93200 112.88172 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 471 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 419 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 371 Spheres center of coords (x y z): 24.6501944743935 23.756481212938 102.946629191375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.33715897322979 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 22