There are 22 ligand heavy atoms Ligand center of coords (x y z): 9.468 32.4635909090909 60.6505 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13529 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9549 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9549 Number of spheres polar: 4593, nonpolar: 3651, out of current total: 9549 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.53120 21.46780 20.46800 44.38300 49.06900 72.64800 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1252 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 545 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 420 Spheres center of coords (x y z): 7.19560904761904 31.3272033333333 63.8966119047619 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.5728163953813 Final number of output spheres is: 120 Number of polar spheres: 40 Number of nonpolar spheres: 60 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 22